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Fargo, N.D.

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Help:
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CHPC Support
www.ndsu.edu/chpc

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The Coalition for Academic Scientific Computation
(CASC).


Gaussian 03

 

 

 

 

 

Gaussian 03 is a connected system of programs for performing semi empirical, ab initio, and density functional molecular orbital (MO) calculations.

  • Availability
Gaussian 03 is on the HP Itanium-2, Altix and the Intel P4 Linux Cluster.
  • Usage
Do you have a CHPC account? Get it now if you are not!
First time user of Gaussian 03 must sign the application form. click here
  • Create the input file
Gaussian 03 input file consists of a series of lines in an ASCII text file. It describes the desired calculation. The basic structure of a Gaussian input file includes several different sections:
  • Link 0 Commands (% lines): Locate and name scratch files
  • Routesection (# lines): Specify desired calculation type, model chemistry and other options
  • Titlesection: Brief description of the calculation
  • Moleculespecification: Specify molecular system to be studied
  • Optionaladditionalsections: Additional input needed for specific job types

Many Gaussian03 jobs will include only the second, third, and fourth sections.
Here is a demo input file, which is named as water.com

%NProcLinda= 2
%chk=bucky.chk
%mem=500MB
# HF/6-31G
water energy
0 1
O
H 1 0.96
H 1 0.96 2 109.471221

The input file could also be built by GaussView .

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  • Transfer the input file to the remote computer

If user creates the Gaussian input file on the CHPC cluster using vi or other Unix/Linux text editors, there is no need for this step. But if user creates it on Windows or on his/her own Unix/Linux machine, he/she needs to transfer the input file to the CHPC cluster. Depending on the operating system, there are different ways to transfer the input file to the remote Unix/Linux computer; in our cases, the CHPC cluster. In a Windows environment, user can use winSCP to copy the Gaussian input file to the remote machine. On Unix/Linux machine, user can use scp to transfer the file. These are covered in the CHPC User Guide.

  • Run the calculation

At the system prompt, run beogaussian to submit the Gaussian job.

$> beogaussian -S -i water.com -n 4 -s /scratch

After submitting the job, the user can issue squeue to monitor the calculation process.

  • View the results

See the CHPC User Guide's Chapter 8.

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Center for High Performance Computing
1735 NDSU Research Park Drive, P.O. Box 5756, Fargo, ND 58105-5756
Phone: 701-231-8045, Fax: 701-231-8089, www.ndsu.edu/chpc

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